Original papers

  • Torada A, Koike M, Ogawa T, Takenouchi Y, Tadamura K, Wu J, Matsumoto T, Kawaura K, Ogihara Y. A Causal Gene for Seed Dormancy on Wheat Chromosome 4A Encodes a MAP Kinase Kinase. Curr Biol. 2016 Mar 21;26(6):782-7. doi: 10.1016/j.cub.2016.01.063. Epub 2016 Mar 3. PubMed PMID: 26948878.
  • Noma S, Kawaura K, Hayakawa K, Abe C, Tsuge N, Ogihara Y. Comprehensive molecular characterization of the α/β-gliadin multigene family in hexaploid wheat. Mol Genet Genomics. 2016 Feb;291(1):65-77. doi: 10.1007/s00438-015-1086-7. Epub 2015 Jul 10. PubMed PMID: 26159870.
  • Morita S, Yamashita Y, Fujiki M, Todaka R, Nishikawa Y, Hosoki A, Yabe C, Nakamura J, Kawamura K, Suwastika IN, Sato MH, Masumura T, Ogihara Y, Tanaka K, Satoh S. Expression of a rice glutaredoxin in aleurone layers of developing and mature seeds: subcellular localization and possible functions in antioxidant defense. Planta. 2015 Nov;242(5):1195-206. doi: 10.1007/s00425-015-2354-9. Epub 2015 Jul 1. PubMed PMID: 26126957
  • Katkout, M., S. Sakuma, K. Kawaura and Y. Ogihara: TaqSH1-D, wheat ortholog of rice seed shattering gene qSH1, maps to the interval of a rachis fragility QTL on chromosome 3DL. Genet. Res. Crop Evol. 62: 979-984 (2015)
  • Kobayashi F, Wu J, Kanamori H, Tanaka T, Katagiri S, Karasawa W, Kaneko S, Watanabe S, Sakaguchi T, Hanawa Y, Fujisawa H, Kurita K, Abe C, Iehisa JC, Ohno R, Zafaz J, Zimkova H, Mukai Y, Hamada M, Saito M, Ishikawa G, Katayose Y, Endo TR, Takumi S, Nakamura T, Sato K, Ogihara Y, Hayakawa K, Dolezel J, Nasuda S, Matsumoto T, Handa H. A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B. BMC Genomics. 2015 Aug 12;16:595. doi: 10.1186/s12864-015-1803-y. PubMed PMID: 26265254; PubMed Central PMCID: PMC4534020.
  • Jung Y, Kawaura K, Mishina K, Sakuma S, Kishii M, Ogihara Y. Changes in genome-wide gene expression during allopolyploidization and genome stabilization in hexaploid wheat. Genes Genet Syst. 2014;89(5):215-25. PubMed PMID: 25832748.
  • Katkout M, Kishii M, Kawaura K, Mishina K, Sakuma S, Umeda K, Takumi S, Nitta M, Nasuda S, Ogihara Y. QTL analysis of genetic loci affecting domestication-related spike characters in common wheat. Genes Genet Syst. 2014;89(3):121-31. PubMed PMID: 25475935.
  • International Wheat Genome Sequencing Consortium (IWGSC). A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science. 2014 Jul 18;345(6194):1251788. PubMed PMID: 25035500.
  • Tanaka T, Kobayashi F, Joshi GP, Onuki R, Sakai H, Kanamori H, Wu J, Simkova H, Nasuda S, Endo TR, Hayakawa K, Dole?el J, Ogihara Y, Itoh T, Matsumoto T, Handa H. Next-generation survey sequencing and the molecular organization of wheat chromosome 6B. DNA Res. 2014;21(2):103-14. PubMed PMID: 24086083

  • Suematsu S, Harano K, Tanaka S, Kawaura K, Ogihara Y, Watari Y, Saito O,Tokuda M. (2013) Effects of barley chromosome addition to wheat on behavior and development of Locusta migratoria nymphs. Sci Rep.3:2577 PubMed PMID: 23999457
  • Yamamoto M, Shitsukawa N, Yamada M, Kato K, Takumi S, Kawaura K, Ogihara Y,Murai K. (2013) Identification of a novel homolog for a calmodulin-binding protein that is upregulated in alloplasmic wheat showing pistillody. Planta. Apr;237(4):1001-13 PubMed PMID: 23192388

  • Abdollahi P, Kamiya Y, Kawaura K, Ogihara Y. Overexpression of Q/q-related homoeoalleles of hexaploid wheat reveals distinct recovery of flower transformation in the apetala2 mutant of Arabidopsis. Plant Biotechnology 2012. 29, 245-252
  • Kawaura K, Wu J, Matsumoto T, Kanamori H, Katagiri S, Ogihara Y. Genome change in wheat observed through the structure and expression of α/β-gliadin genes. Funct Integr Genomics. 2012 2012 Jun;12(2):341-55. Epub 2012 Feb 28. PubMed PMID: 22370744
  • Manickavelu A, Kawaura K, Oishi K, Shin-I T, Kohara Y, Yahiaoui N, Keller B, Abe R, Suzuki A, Nagayama T, Yano K, Ogihara Y. Comprehensive Functional Analyses of Expressed Sequence Tags in Common Wheat (Triticum aestivum). DNA Res. 2012 Apr;19(2):165-77. Epub 2012 Feb 14. PubMed PMID: 22334568
  • Kawaura K, Saeki A, Masumura T, Morita S, Ogihara Y. Heteroplasmy and expression of mitochondrial genes in alloplasmic and euplasmic wheat. Genes Genet Syst. 2011;86(4):249-55. PubMed PMID: 22214593
  • Tang J, Ohyama K, Kawaura K, Hashinokuchi H, Kamiya Y, Suzuki M, Muranaka T, Ogihara Y . A New Insight into Application for Barley Chromosome Addition Lines of Common Wheat: Achievement of Stigmasterol Accumulation. Plant Physiol. 2011 Sep 27. [Epub ahead of print] PubMed PMID: 21951468.
  • Kumashiro S, Matsukura K, Kawaura K, Matsumura M, Ogihara Y, Tokuda M. Effect of barley chromosome addition on the susceptibility of wheat to feeding by a gall-inducing leafhopper. Naturwissenschaften. 2011 Nov;98(11):983-7. Epub 2011 Sep 25. PubMed PMID: 21947194
  • Nakamura S, Abe F, Kawahigashi H, Nakazono K, Tagiri A, Matsumoto T, Utsugi S, Ogawa T, Handa H, Ishida H, Mori M, Kawaura K, Ogihara Y, Miura H. A Wheat Homolog of MOTHER OF FT AND TFL1 Acts in the Regulation of Germination. Plant Cell. 2011 Sep 6. [Epub ahead of print] PubMed PMID: 21896881.
  • Kanako Kawaura, Tsuneyuki Naruse, Keisuke Sekine, Yasunari Ogihara. Assessment of salt tolerance in Xinjiang Uighur wheat. eWIS111: 5-10
  • Manickavelu A, Kawaura K, Imamura H, Mori M, Ogihara Y. Molecular mapping of quantitative trait loci for domestication traits and β-glucan content in a wheat recombinant inbred line population Euphytica 2010 117(2) 179-190
  • Manickavelu A, Kawaura K, Oishi K, Shin-I T, Kohara Y, Yahiaoui N, Keller B, Suzuki A, Yano K, Ogihara Y. Comparative Gene Expression Analysis of Susceptible and Resistant Near-Isogenic Lines in Common Wheat Infected by Puccinia triticina. DNA Res. 2010 Aug; 17(4): 211-22 PubMed PMID: 20360266.
  • Ishikawa M, Ohmori Y, Tanaka W, Hirabayashi C, Murai K, Ogihara Y, Yamaguchi T, Hirano HY. The spatial expression patterns of DROOPING LEAF orthologs suggest a conserved function in grasses. Genes Genet Syst. 2009 Apr;84(2):137-46. PubMed PMID: 19556707
  • Kawaura K*, Mochida K*, Enju A, Totoki Y, Toyoda A, Sakaki Y, Kai C, Kawai J, Hayashizaki Y, Seki M, Shinozaki K, Ogihara Y. Assessment of adaptive evolution between wheat and rice as deduced from the full-length cDNA sequence data and the expression patterns of common wheat. BMC Genomics. 2009 Jun 18;10(1):271. [Epub ahead of print] PubMed PMID: 19534823.
  • Mochida K, Yoshida T, Sakurai T, Ogihara Y, Shinozaki K. TriFLDB: A Database of Clustered Full-Length Coding Sequences from Triticeae with Applications to Comparative Grass Genomics. Plant Physiol. 2009 May 15. [Epub ahead of print] PubMed PMID: 19448038.
  • Tsunewaki, K., Y. Matsuoka, Y. Yamazaki and Y. Ogihara: Evolutionary dynamics of wheat mitochondrial gene structure with special remarks on the origin and effects of RNA editing in cereals. Genes Genet. Syst. 83: 301-320 (2008)
  • Araki, E., T.M. Ikeda, Y. Ogihara, A. Toyoda and H. Yano: Development of transgenic rice (Oryza sativa L.) expressing wheat high- and low-molecular-weight glutenin subunit proteins. Breeding Sci. 58 (2): 121-128 (2008)
  • Kobayashi F, Maeta E, Terashima A, Kawaura K, Ogihara Y, Takumi S. Development of abiotic stress tolerance via bZIP-type transcription factor LIP19 in common wheat. J Exp Bot. 2008 ;59(4):891-905. Epub 2008 Mar 7.
  • Kawaura K, Mochida K, Ogihara Y.. Genome-wide analysis for identification of salt-responsive genes in common wheat.Funct Integr Genomics. 2008 Aug;8(3):277-86. Epub 2008 Mar 5.
  • Nomura T, Nasuda S, Kawaura K, Ogihara Y, Kato N, Sato F, Kojima T, Toyoda A, Iwamura H, Endo TR. Structures of the three homoeologous loci of wheat benzoxazinone biosynthetic genes TaBx3 and TaBx4 and characterization of their promoter sequences. Theor Appl Genet. 2008 Feb;116(3):373-81. Epub 2007 Nov 27.
  • Shitsukawa N, Tahira C, Kassai K, Hirabayashi C, Shimizu T, Takumi S, Mochida K, Kawaura K, Ogihara Y, Murai K. Genetic and epigenetic alteration among three homoeologous genes of a class E MADS box gene in hexaploid wheat. Plant Cell. 2007 Jun;19(6):1723-37. Epub 2007 Jun 22.
  • Sasaki T, Ryan PR, Delhaize E, Hebb DM, Ogihara Y, Kawaura K, Noda K, Kojima T, Toyoda A, Matsumoto H, Yamamoto Y. Sequence Upstream of the Wheat (Triticum aestivum L.) ALMT1 Gene and Its Relationship to Aluminum Resistance.Plant Cell Physiol. 2006 Oct;47(10):1343-54. Epub 2006 Aug 23.
  • Furukawa, S., K. Tanaka, T. Masumura, Y. Ogihara, Y. Kiyokawa and Y. Wakai: Influence of rice proteins on eating quality of cooked rice and on aroma and flavor of sake. Cereal Chem. 2006 83: 439-446
  • Mochida K, Kawaura K, Shimosaka E, Kawakami N, Shin-I T, Kohara Y, Yamazaki Y, Ogihara Y. Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat. Mol Genet Genomics. 2006 Sep;276(3):304-12
  • Koike M, Kawaura K, Ogihara Y, Torada A. Isolation and characterization of SSR sequences from the genome and TAC clones of common wheat using the PCR technique. Genome. 2006 May;49(5):432-44.
  • Torada A, Koike M, Mochida K, Ogihara Y. SSR-based linkage map with new markers using an intraspecific population of common wheat. Theor Appl Genet. 2006 Apr;112(6):1042-51.
  • Kawaura K, Mochida K, Yamazaki Y, Ogihara Y. Transcriptome analysis of salinity stress responses in common wheat using a 22k oligo-DNA microarray. Funct Integr Genomics. 2006 Mar;6(2):132-42.
  • Kawaura K, Mochida K, Ogihara Y. Expression profile of two storage-protein gene families in hexaploid wheat revealed by large-scale analysis of expressed sequence tags. Plant Physiol. 2005 Dec;139(4):1870-80.
  • Ogihara Y, Yamazaki Y, Murai K, Kanno A, Terachi T, Shiina T, Miyashita N, Nasuda S, Nakamura C, Mori N, Takumi S, Murata M, Futo S, Tsunewaki K. Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome. Nucleic Acids Res. 2005 Oct 31;33(19):6235-50.
  • Devos KM, Beales J, Ogihara Y, Doust AN. Comparative sequence analysis of the phytochrome C gene and its upstream region in allohexaploid wheat reveals new data on the evolution of its three constituent genomes. Plant Mol Biol. 2005 Jul;58(5):625-41.
  • Naydenov, N., S. Takumi, A. Sugie, Y. Ogihara, A. Atanassov and C. Nakamura: Structural diversity of the wheat nuclear gene Waox1a encoding mitochondrial alternative oxidase, a single unique enzyme in the cyanide-resistant alternative pathway. Biotechnology and Biotechnological Equipment 19: 48-56 (2005)
  • Ogihara Y, Mochida K, Kawaura K, Murai K, Seki M, Kamiya A, Shinozaki K, Carninci P, Hayashizaki Y, Shin-I T, Kohara Y, Yamazaki Y. Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags.Genes Genet Syst. 2004 Aug;79(4):227-32.
  • Gill BS, Appels R, Botha-Oberholster AM, Buell CR, Bennetzen JL, Chalhoub B, Chumley F, Dvorak J, Iwanaga M, Keller B, Li W, McCombie WR, Ogihara Y, Quetier F, Sasaki T. A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium. Genetics. 2004 Oct;168(2):1087-96
  • Hama E, Takumi S, Ogihara Y, Murai K. Pistillody is caused by alterations to the class-B MADS-box gene expression pattern in alloplasmic wheats. Planta. 2004 Mar;218(5):712-20..
  • Murai K, Miyamae M, Kato H, Takumi S, Ogihara Y. WAP1, a wheat APETALA1 homolog, plays a central role in the phase transition from vegetative to reproductive growth. Plant Cell Physiol. 2003 Dec;44(12):1255-65.
  • Mochida K, Yamazaki Y, Ogihara Y. Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags. Mol Genet Genomics. 2003 Dec;270(5):371-7.
  • Mizumoto K, Takumi S, Ogihara Y, Nakamura C. Origin, dispersal and genomic structure of a low-copy-number hypervariable RFLP clone in Triticum and Aegilops species. Genes Genet Syst. 2003 Aug;78(4):291-300.
  • Nemoto Y, Kisaka M, Fuse T, Yano M, Ogihara Y. Characterization and functional analysis of three wheat genes with homology to the CONSTANS flowering time gene in transgenic rice. Plant J. 2003 Oct;36(1):82-93.
  • Ogihara Y, Mochida K, Nemoto Y, Murai K, Yamazaki Y, Shin-I T, Kohara Y. Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags. Plant J. 2003 Mar;33(6):1001-11.
  • Meguro, A., S. Takumi, Y. Ogihara and K. Murai: WAG, a wheat AGAMOUS homolog, is associated with development of pistil-like stamens in alloplasmic wheats. Sex. Plant Reprd. 15:221-230 (2003)
  • Matsuoka Y, Yamazaki Y, Ogihara Y, Tsunewaki K. Whole chloroplast genome comparison of rice, maize, and wheat: implications for chloroplast gene diversification and phylogeny of cereals. Mol Biol Evol. 2002 Dec;19(12):2084-91.
  • Ogihara Y, Ohsawa T. Molecular analysis of the complete set of length mutations found in the plastomes of Triticum-Aegilops species. Genome. 2002 Oct;45(5):956-62.
  • Murai K, Takumi S, Koga H, Ogihara Y. Pistillody, homeotic transformation of stamens into pistil-like structures, caused by nuclear-cytoplasm interaction in wheat. Plant J. 2002 Jan;29(2):169-81.
  • Ogihara Y, Isono K, Kojima T, Endo A, Hanaoka M, Shiina T, Terachi T, Utsugi S, Murata M, Mori N, Takumi S, Ikeo K, Gojobori T, Murai R, Murai K, Matsuoka Y, Ohnishi Y, Tajiri H, Tsunewaki K. Structural features of a wheat plastome as revealed by complete sequencing of chloroplast DNA. Mol Genet Genomics. 2002 Jan;266(5):740-6.
  • Singh, K.P., A. Singh, S.N. Raina, A.K. Singh and Y. Ogihara: Ribosomal DNA repeat unit polymorphism and heritability in peanut (Arachis hypogaea L.) accessions and related wild species.  Euphytica 123: 211-220 (2002)
  • Goel, S., S.N. Raina and Y. Ogihara: Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of nuclear ribosomal DNA in Phaseolus-Vigna complex. Molecular and Phylogenetic Evolution. 22: 1-19 (2002)
  • Tsujimoto H, Yamada T, Hasegawa K, Usami N, Kojima T, Endo TR, Ogihara Y, Sasakuma T. Large-scale selection of lines with deletions in chromosome 1 B in wheat and applications for fine deletion mapping. Genome. 2001 Aug;44(4):501-8.
  • Ishii, T., N. Mori and Y. Ogihara: Evaluation of allelic diversity at chloroplast microsatellite loci among common wheat and its ancestral species.  Theor. Appl. Genet. 103: 896-904 (2001)
  • Raina, S.N., T. Kojima, V. Rani, Y. Ogihara, K.P. Singh and D.M. Devarumathc: RAPD and ISSR fingerprints as useful genetic markers for analysis of genetic diversity, varietal identification, and phylogenetic relationships in peanut (Arachis hypogaea) cultivars and wild species.  Genome 44: 763-772 (2001)
  • Liu YG, Nagaki K, Fujita M, Kawaura K, Uozumi M, Ogihara Y. Development of an efficient maintenance and screening system for large-insert genomic DNA libraries of hexaploid wheat in a transformation-competent artificial chromosome (TAC) vector. Plant J. 2000 Sep;23(5):687-95.
  • Kojima T, Habu Y, Iida S, Ogihara Y. Direct isolation of differentially expressed genes from a specific chromosome region of common wheat: application of the amplified fragment length polymorphism-based mRNA fingerprinting (AMF) method in combination with a deletion line of wheat. Mol Gen Genet. 2000 May;263(4):635-41.
  • Ogihara,Y., K. Isono, T. Kojima, A. Endo, M. Hanaoka, T. Shiina, T. Terachi, S. Utsugi, M. Murata, N. Mori, S. Takumi, K. Ikeo, T. Gojobori, R. Murai, K. Murai, Y. Matsuoka, U. Ohnishi, H. Tajiri and K. Tsunewaki: Chinese Spring wheat (Triticum aestivum L.) chloroplast genome: Complete sequence and contig clones. Plant Mol. Biol. Rep. 18: 243-253 (2000)

Books/ Reviews
  • 川浦香奈子・荻原保成: コムギ種子貯蔵タンパク質遺伝子のトランスクリプトーム解析. 種子の科学とバイオテクノロジー 学会出版センター pp191-194 (2009) Japanese
  • 荻原保成: 倍数性コムギの比較ゲノム.比較ゲノム学から読み解く生命システム 秀潤社pp146-152 (2007) Japanese
  • Ogihara, Y.: Genome science of polyploid wheat. Frontiers of Wheat Biosciences: 169-184. Memorial issue, Wheat Information Services No. 100 (2005)
  • 荻原保成:コムギ.ゲノムから生命システムへ ゲノムから生物学―D.環境相互作用 蛋白質 核酸 酵素 Vol.50 No. 16 pp. 2239-2240 (2005)Japanese
  • 荻原保成:倍数性コムギの比較ゲノム解析. 十勝農学談話会誌 46:39-45(2005)Japanese
  • 荻原保成:倍数性コムギのゲノムサイエンス. 植物のゲノムサイエンスプロトコール. 秀潤社pp. 186-192 (2001)Japanese
  • 荻原保成:コムギ(ムギ類)のゲノムとDNAレポジトリー. ライフサイエンスのための系統保存とデータバンク. 共立出版 pp. 84-88 (2000)Japanese